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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
231
DNA accessibility
Date released
100
May, 2020
39
May, 2022
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
6
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
1
February, 2021
Available data
113
bam
107
bigWig
68
bed narrowPeak
51
bigBed narrowPeak
39
zippedFastqFolder
33
fastq
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
Organism
231
Homo sapiens
Biosample type
438
tissue
231
primary cell
43
in vitro differentiated cells
31
cell line
Organ
90
epithelium
71
pancreas
12
kidney
8
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
182
AMP
49
HPAP
Genome assembly (visualization)
106
hg19
76
GRCh38
Lab
182
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
15
inconsistent ontology term
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic acinar cell
9
pancreatic ductal cell
4
cardiac fibroblast
3
gabaergic neuron
3
glutamatergic neuron
3
kidney tubule cell
3
microglial cell/astrocyte
3
oligodendrocyte
3
osteoblast
2
1
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
skeletal muscle myoblast
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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