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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
87
DNA accessibility
Date released
27
February, 2021
24
June, 2019
21
May, 2022
8
January, 2021
4
October, 2019
2
August, 2017
1
November, 2020
Available data
29
bam
29
bed narrowPeak
29
bigBed narrowPeak
29
bigWig
28
bed broadPeak
28
bigBed broadPeak
28
fastq
27
bed bed3+
21
zippedFastqFolder
Organism
87
Homo sapiens
Biosample type
206
tissue
87
primary cell
2
cell line
1
in vitro differentiated cells
Organ
18
epithelium
12
kidney
8
blood
8
bodily fluid
6
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
Project
48
HPAP
31
AMP
8
T1D
Genome assembly (visualization)
27
GRCh38
22
hg19
Lab
48
Klaus Kaestner, Upenn
31
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
3
inconsistent ontology term
BIOSAMPLE
ASSAY
87 results
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snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
osteoblast
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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