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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
ChIP-seq
6
WGBS
4
Hi-C
1
DNase-seq
1
RRBS
1
pCHi-C
Assay category
130
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Date released
76
February, 2023
46
February, 2021
38
September, 2020
4
July, 2019
2
August, 2017
2
May, 2021
1
November, 2018
1
September, 2018
Available data
163
fastq
153
zippedFastqFolder
54
bigWig
49
bam
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bedpe bed3+
4
hdf5
3
bed narrowPeak
3
bigBed narrowPeak
3
cool
2
csv
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
170
Homo sapiens
Biosample type
170
primary cell
33
tissue
11
in vitro differentiated cells
2
cell line
1
stem cell
Organ
61
epithelium
59
pancreas
3
brain
2
blood vessel
2
connective tissue
2
vasculature
1
liver
Project
159
HPAP
11
AMP
Genome assembly (visualization)
GRCh38
171
hg19
Lab
159
Klaus Kaestner, Upenn
9
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
27
audit script error
assembly!
GRCh38
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
DNase-seq
RRBS
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
pancreatic cell
2
skeletal muscle myoblast
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
osteoblast
1
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