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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
RRBS
4
Hi-C
2
DNase-seq
1
FAIRE-seq
Assay category
26
DNA binding
6
DNA methylation
4
3D chromatin structure
3
DNA accessibility
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
12
August, 2017
12
October, 2019
8
July, 2019
2
June, 2019
2
November, 2017
1
August, 2021
1
March, 2020
1
May, 2019
Available data
27
bam
14
fastq
7
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
2
hic
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tagAlign
1
tar
Organism
39
Homo sapiens
Biosample type
39
primary cell
24
cell line
15
tissue
4
in vitro differentiated cells
Organ
39
epithelium
15
vasculature
13
blood vessel
12
pancreas
10
vein
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
Project
39
AMP
Genome assembly (visualization)
224
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
RRBS
Hi-C
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
7
2
1
pancreatic alpha cell
6
pancreatic beta cell
6
epithelial cell of proximal tubule
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
hepatocyte
1
1
kidney epithelial cell
1
1
retinal pigment epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
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