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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
12
ChIP-seq
10
ATAC-seq
6
WGBS
Assay category
128
Transcription
37
DNA accessibility
12
DNA binding
6
DNA methylation
Target of assay
12
control
Date released
76
February, 2023
45
February, 2021
41
September, 2020
12
August, 2017
7
August, 2020
1
November, 2018
1
September, 2018
Available data
183
fastq
153
zippedFastqFolder
35
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
183
Homo sapiens
Biosample type
183
primary cell
83
tissue
60
cell line
23
in vitro differentiated cells
1
stem cell
Organ
81
epithelium
81
pancreas
Project
169
HPAP
14
AMP
Genome assembly (visualization)
229
GRCh38
hg19
Lab
169
Klaus Kaestner, Upenn
14
AMP-T2D consortium
Audit category:
27
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
183 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
7
6
exocrine cell
39
pancreatic beta cell
11
6
3
pancreatic cell
2
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