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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
7
single cell RNA-seq
6
ATAC-seq
4
total RNA-seq
3
DNase-seq
2
RRBS
Assay category
20
DNA binding
11
Transcription
9
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
21
June, 2019
8
May, 2020
6
July, 2018
2
July, 2019
2
May, 2019
2
October, 2019
1
June, 2018
Available data
40
bam
38
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
11
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
42
Homo sapiens
Biosample type
108
in vitro differentiated cells
60
cell line
42
primary cell
4
tissue
Organ
11
connective tissue
8
epithelium
7
musculature of body
6
kidney
5
heart
5
pancreas
1
liver
1
vasculature
Project
38
AMP
4
T1D
Genome assembly (visualization)
42
hg19
36
GRCh38
Lab
38
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
primary cell
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
1
1
central memory CD8-positive, alpha-beta T cell
2
2
epithelial cell of proximal tubule
2
1
1
naive B cel
2
2
co-expressing pancreatic endocrine cell
2
kidney epithelial cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
smooth muscle cell of the brain vasculature
1
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