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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
41
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
1
control
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
40
June, 2019
31
July, 2019
25
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
Available data
46
bam
46
bigWig
46
fastq
33
bed narrowPeak
19
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
47
Homo sapiens
Biosample type
180
tissue
49
in vitro differentiated cells
47
primary cell
Organ
29
pancreas
17
epithelium
Project
47
AMP
Genome assembly (visualization)
47
hg19
42
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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