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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
12
single cell RNA-seq
6
WGBS
1
ATAC-seq
1
pCHi-C
1
total RNA-seq
Assay category
28
DNA accessibility
13
Transcription
6
DNA methylation
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
45
fastq
7
tsv
3
bam
2
bigWig
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
48
Homo sapiens
Biosample type
461
tissue
70
cell line
48
primary cell
8
in vitro differentiated cells
Organ
6
epithelium
6
pancreas
3
connective tissue
Project
45
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
45
Klaus Kaestner, Upenn
3
AMP-T2D consortium
Audit category:
27
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
48 results
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snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
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