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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
Assay category
273
Transcription
105
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Date released
76
February, 2023
56
September, 2020
51
May, 2021
45
May, 2020
33
May, 2022
12
February, 2021
Available data
126
fastq
96
bam
96
bigWig
96
tsv
52
zippedFastqFolder
Organism
273
Homo sapiens
Biosample type
273
primary cell
63
tissue
4
cell line
2
stem cell
Organ
53
epithelium
53
pancreas
Project
177
HPAP
AMP
96
T1D
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
177
Klaus Kaestner, Upenn
96
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
273 results
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Clear Filters
total RNA-seq
single cell RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
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