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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
Available data
2516
bam
2345
bigWig
1346
tsv
1239
bed narrowPeak
786
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
157
Homo sapiens
Biosample type
157
tissue
3
in vitro differentiated cells
1
cell line
0
primary cell
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
157
AMP
Genome assembly (visualization)
1
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
BIOSAMPLE
ASSAY
157 results
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RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
skeletal muscle tissue
1
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