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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
445
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
9
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
463
Transcription
36
DNA accessibility
6
DNA methylation
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
459
tsv
455
bam
446
bigWig
89
txt
45
fastq
9
bed narrowPeak
6
csv
1
bed bed3
1
bed bed3+
Organism
593
Homo sapiens
Biosample type
545
tissue
96
cell line
48
primary cell
26
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
1
liver
Project
548
AMP
45
HPAP
Genome assembly (visualization)
455
hg19
454
GRCh38
Lab
548
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
BIOSAMPLE
ASSAY
593 results
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total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
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