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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
24
total RNA-seq
18
ATAC-seq
8
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
Assay category
219
DNA binding
27
DNA accessibility
24
Transcription
2
3D chromatin structure
Target of assay
189
histone
189
histone modification
138
narrow histone mark
51
broad histone mark
30
control
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
217
bam
183
bigWig
172
bed narrowPeak
60
bigBed narrowPeak
49
tagAlign
10
tsv
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
276
Homo sapiens
Biosample type
242
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
33
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
7
liver
4
gonad
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
276
AMP
Genome assembly (visualization)
189
hg19
183
GRCh38
Lab
276
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
276 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
liver
5
1
kidney
4
superior frontal gyrus
4
central medial thalamic nucleus
3
middle temporal gyrus
3
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
adipose tissue
1
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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