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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
snATAC-seq
47
WGBS
32
ChIP-seq
17
pCHi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
124
DNA accessibility
58
DNA methylation
32
DNA binding
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
113
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
35
May, 2021
19
February, 2021
13
August, 2017
10
October, 2019
9
July, 2019
8
June, 2019
1
August, 2021
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
609
bam
382
fastq
295
bed narrowPeak
270
tsv
132
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
413
Homo sapiens
Biosample type
966
tissue
413
primary cell
138
cell line
131
in vitro differentiated cells
7
stem cell
Organ
170
epithelium
151
pancreas
8
kidney
7
connective tissue
6
vasculature
5
blood vessel
5
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
263
HPAP
134
AMP
16
T1D
Genome assembly (visualization)
27
hg19
16
GRCh38
Lab
263
Klaus Kaestner, Upenn
134
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
files.file_type!
hic
bigWig
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
RRBS
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
22
42
31
6
Langerhans cell
85
pancreatic beta cell
13
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
1
macrophage
11
1
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
cardiac fibroblast
2
1
epithelial cell of proximal tubule
2
1
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
neutrophil
1
1
1
oligodendrocyte
3
CD4-positive, alpha-beta T cell
2
cardiac muscle cell
1
1
hepatocyte
1
1
kidney epithelial cell
1
1
osteoblast
1
1
pancreatic cell
2
retinal pigment epithelial cell
1
1
skeletal muscle cell
1
1
B cell
1
CD8-positive, alpha-beta T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
choroid plexus epithelial cell
1
erythroblast
1
inflammatory macrophage
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
megakaryocyte
1
mesenchymal stem cell
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
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