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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
47
WGBS
40
ATAC-seq
22
ChIP-seq
6
RRBS
2
DNase-seq
Assay category
53
DNA methylation
53
Transcription
42
DNA accessibility
22
DNA binding
Target of assay
19
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
37
February, 2023
16
September, 2020
12
August, 2017
9
October, 2019
6
February, 2021
6
July, 2019
2
June, 2019
1
August, 2021
1
May, 2019
Available data
242
bam
238
fastq
bigWig
116
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
170
Homo sapiens
Biosample type
170
primary cell
28
cell line
15
tissue
4
in vitro differentiated cells
Organ
170
epithelium
151
pancreas
8
blood
8
bodily fluid
8
kidney
7
connective tissue
6
vasculature
5
blood vessel
5
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
139
HPAP
31
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
139
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
hic
bigWig
BIOSAMPLE
ASSAY
170 results
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Clear Filters
total RNA-seq
WGBS
ATAC-seq
ChIP-seq
RRBS
DNase-seq
primary cell
pancreatic alpha cell
42
31
22
6
pancreatic beta cell
11
16
13
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
epithelial cell of proximal tubule
2
1
hepatocyte
1
1
kidney epithelial cell
1
1
retinal pigment epithelial cell
1
1
Liver fetal (hepatocyte)
1
choroid plexus epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
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