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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
5
December, 2019
2
July, 2019
2
June, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
10
Homo sapiens
Biosample type
389
cell line
291
tissue
15
in vitro differentiated cells
10
primary cell
Organ
402
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
10
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
10 results
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total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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