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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
17
ATAC-seq
Assay category
123
DNA binding
17
DNA accessibility
Target of assay
123
histone
123
histone modification
68
broad histone mark
55
narrow histone mark
Date released
127
May, 2021
8
October, 2019
3
August, 2021
1
February, 2021
1
November, 2020
Available data
613
bigWig
609
bam
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
140
Homo sapiens
Biosample type
382
tissue
140
primary cell
49
cell line
39
in vitro differentiated cells
Organ
10
epithelium
6
kidney
4
liver
2
connective tissue
Project
84
T1D
56
AMP
Genome assembly (visualization)
140
hg19
110
GRCh38
Lab
114
Kyle Gaulton, UCSD
26
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed narrowPeak
fastq
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
ATAC-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
epithelial cell of proximal tubule
6
hepatocyte
3
osteoblast
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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