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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
DNase-seq
2
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
15
DNA binding
5
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
15
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
Available data
27
bam
24
bigWig
17
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
24
Homo sapiens
Biosample type
70
tissue
56
cell line
24
primary cell
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
24
AMP
Genome assembly (visualization)
23
hg19
18
GRCh38
Lab
24
AMP-T2D consortium
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
12
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
smooth muscle cell of the coronary artery
1
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