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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
1
FAIRE-seq
Assay category
6
3D chromatin structure
1
DNA accessibility
Date released
3
October, 2022
2
October, 2019
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
7
Homo sapiens
Biosample type
11
tissue
7
primary cell
5
cell line
4
in vitro differentiated cells
Organ
6
epithelium
3
blood vessel
3
pancreas
3
vasculature
3
vein
Project
3
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
BIOSAMPLE
ASSAY
7 results
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Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
1
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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