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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
27
DNase-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
100
DNA binding
27
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
2
control
Date released
86
May, 2021
24
June, 2019
12
August, 2017
4
August, 2021
4
July, 2019
2
October, 2019
1
February, 2021
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
134
Homo sapiens
Biosample type
443
tissue
134
primary cell
65
in vitro differentiated cells
23
cell line
3
stem cell
Organ
22
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
7
liver
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
84
T1D
50
AMP
Genome assembly (visualization)
126
hg19
125
GRCh38
Lab
86
Kyle Gaulton, UCSD
48
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
1
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
astrocyte of the hippocampus
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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