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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
6
Hi-C
Assay category
100
DNA binding
6
3D chromatin structure
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
2
control
Date released
84
May, 2021
12
August, 2017
4
August, 2021
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
106
Homo sapiens
Biosample type
249
tissue
106
primary cell
44
in vitro differentiated cells
22
cell line
Organ
9
epithelium
4
liver
3
pancreas
2
blood vessel
2
vasculature
2
vein
Project
84
T1D
18
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
104
hg19
99
GRCh38
Lab
84
Kyle Gaulton, UCSD
18
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
Hi-C
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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