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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
4
Hi-C
Assay category
222
Transcription
105
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
169
fastq
153
zippedFastqFolder
55
bigWig
51
tsv
45
bam
4
hic
3
bedpe bed3+
3
cool
Organism
378
Homo sapiens
Biosample type
378
primary cell
310
tissue
47
cell line
7
in vitro differentiated cells
2
stem cell
Organ
152
epithelium
152
pancreas
8
blood
8
bodily fluid
Project
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
56
GRCh38
48
hg19
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
May, 2021
BIOSAMPLE
ASSAY
378 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
monocyte
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
chondrocytes
1
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
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