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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
DNase-seq
4
Hi-C
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
7
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
21
October, 2019
6
November, 2017
4
June, 2019
3
July, 2019
1
March, 2020
Available data
30
bam
27
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
35
Homo sapiens
Biosample type
126
tissue
35
primary cell
14
cell line
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
35
AMP
Genome assembly (visualization)
29
hg19
20
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
December, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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