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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
27
snATAC-seq
12
single cell RNA-seq
10
ATAC-seq
8
ChIP-seq
2
pCHi-C
Assay category
91
Transcription
37
DNA accessibility
8
DNA binding
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
324
November, 2017
226
May, 2021
148
May, 2020
138
February, 2021
94
February, 2023
93
May, 2022
73
September, 2018
64
October, 2019
61
November, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
28
December, 2018
23
January, 2019
22
July, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
98
bam
85
bigWig
79
tsv
39
fastq
15
bed narrowPeak
8
tagAlign
2
bed bed3
2
bed bed3+
Organism
138
Homo sapiens
Biosample type
545
tissue
96
cell line
42
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
3
connective tissue
2
liver
Project
99
AMP
39
HPAP
Genome assembly (visualization)
96
hg19
94
GRCh38
Lab
99
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
27
audit script error
26
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
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