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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
27
snATAC-seq
12
single cell RNA-seq
8
ATAC-seq
8
ChIP-seq
6
WGBS
2
pCHi-C
Assay category
91
Transcription
35
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
324
November, 2017
227
May, 2021
148
May, 2020
142
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
98
bam
85
bigWig
85
tsv
45
fastq
15
bed narrowPeak
8
tagAlign
bed bed3
2
bed bed3+
Organism
142
Homo sapiens
Biosample type
545
tissue
95
cell line
47
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
2
connective tissue
1
liver
Project
97
AMP
45
HPAP
Genome assembly (visualization)
94
hg19
92
GRCh38
Lab
97
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
26
inconsistent ontology term
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
142 results
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Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
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