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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
10
ATAC-seq
8
ChIP-seq
2
pCHi-C
Assay category
79
Transcription
10
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
324
November, 2017
103
May, 2020
99
February, 2021
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
41
May, 2021
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
14
August, 2021
13
February, 2023
12
March, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
January, 2018
1
October, 2022
Available data
98
bam
85
bigWig
79
tsv
15
bed narrowPeak
8
tagAlign
2
bed bed3
2
bed bed3+
Organism
99
Homo sapiens
Biosample type
545
tissue
96
cell line
26
in vitro differentiated cells
3
primary cell
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
3
connective tissue
2
liver
Project
99
AMP
Genome assembly (visualization)
96
hg19
94
GRCh38
Lab
99
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
99 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
osteoblast
1
1
1
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