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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
30
ChIP-seq
27
snATAC-seq
12
single cell RNA-seq
10
ATAC-seq
6
WGBS
5
STARR-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
whole genome sequencing assay
Assay category
108
Transcription
37
DNA accessibility
30
DNA binding
6
DNA methylation
1
3D chromatin structure
1
DNA sequencing
Target of assay
16
transcription factor
8
control
6
histone
6
histone modification
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
110
bam
110
bigWig
102
tsv
45
fastq
32
bed narrowPeak
12
tagAlign
5
bed bed3+
2
bed bed3
1
bedpe bed3+
1
hic
1
vcf
Organism
192
Homo sapiens
Biosample type
774
tissue
140
cell line
68
in vitro differentiated cells
52
primary cell
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
38
epithelium
37
liver
34
pancreas
8
embryo
3
connective tissue
2
kidney
Project
147
AMP
45
HPAP
Genome assembly (visualization)
122
hg19
105
GRCh38
Lab
113
AMP-T2D consortium
45
Klaus Kaestner, Upenn
34
Bing Ren, UCSD
Audit category:
29
inconsistent ontology term
27
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
192 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
STARR-seq
Capture-C
pCHi-C
Hi-C
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
9
18
1
2
1
1
1
EndoC_BH1
26
2
H1-hESC
8
HEK293T
2
iPSC derived cell line
2
Synthesized DNA
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
hepatocyte
4
osteoblast
1
1
1
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