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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
27
snATAC-seq
24
DNase-seq
12
single cell RNA-seq
6
WGBS
1
ATAC-seq
1
pCHi-C
1
total RNA-seq
Assay category
52
DNA accessibility
31
DNA binding
13
Transcription
6
DNA methylation
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
58
bam
49
bigWig
48
bed narrowPeak
47
bigBed narrowPeak
45
fastq
25
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
7
tsv
1
bed bed3
Organism
103
Homo sapiens
Biosample type
708
tissue
103
primary cell
96
cell line
26
in vitro differentiated cells
Organ
26
epithelium
20
connective tissue
13
kidney
11
musculature of body
8
heart
6
pancreas
5
brain
4
eye
4
vasculature
2
blood vessel
2
liver
Project
58
AMP
45
HPAP
Genome assembly (visualization)
49
GRCh38
43
hg19
Lab
58
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
25
inconsistent ontology term
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
snATAC-seq
DNase-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
27
12
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
6
cardiac muscle cell
3
1
epithelial cell of proximal tubule
3
1
retinal pigment epithelial cell
3
1
osteoblast
1
1
1
skeletal muscle cell
2
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
renal cortical epithelial cell
1
smooth muscle cell of the brain vasculature
1
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