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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
55
total RNA-seq
24
DNase-seq
16
pCHi-C
13
ATAC-seq
1
DNAme array
Assay category
152
DNA binding
55
Transcription
37
DNA accessibility
1
DNA methylation
Target of assay
137
histone
137
histone modification
74
broad histone mark
63
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
218
bigWig
204
bam
174
bed narrowPeak
84
tagAlign
52
tsv
47
bigBed narrowPeak
26
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
Organism
261
Homo sapiens
Biosample type
261
primary cell
203
tissue
132
in vitro differentiated cells
21
cell line
Organ
20
epithelium
18
connective tissue
13
kidney
11
musculature of body
8
heart
5
brain
4
eye
4
vasculature
2
blood vessel
2
liver
1
bone element
1
bone marrow
Project
151
T1D
110
AMP
Genome assembly (visualization)
224
hg19
196
GRCh38
Lab
186
Kyle Gaulton, UCSD
75
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
BIOSAMPLE
ASSAY
261 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
DNAme array
primary cell
monocyte
85
52
1
13
1
CD8-positive, alpha-beta T cell
33
2
1
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
3
1
epithelial cell of proximal tubule
3
1
retinal pigment epithelial cell
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
skeletal muscle cell
2
1
CD4-positive, alpha-beta T cell
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
neutrophil
1
1
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
embryonic stem cell
1
erythroblast
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
inflammatory macrophage
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
macrophage
1
megakaryocyte
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
renal cortical epithelial cell
1
smooth muscle cell of the brain vasculature
1
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