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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
total RNA-seq
117
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
1
Hi-C
Assay category
222
Transcription
117
DNA binding
56
DNA accessibility
1
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
54
May, 2022
45
May, 2020
40
September, 2020
39
February, 2021
39
February, 2023
8
January, 2021
1
March, 2023
Available data
215
bigWig
180
bam
114
bed narrowPeak
100
fastq
96
tsv
84
tagAlign
73
zippedFastqFolder
2
bed bed3+
1
hic
Organism
412
Homo sapiens
Biosample type
412
primary cell
249
tissue
54
in vitro differentiated cells
41
cell line
2
stem cell
Organ
152
epithelium
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
204
T1D
172
HPAP
35
AMP
1
ITG
Genome assembly (visualization)
215
hg19
181
GRCh38
Lab
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
organ_slims!
pancreas
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive regulatory T cell
2
regulatory T cell
2
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
chondrocytes
1
erythroblast
1
immature natural killer cell
1
inflammatory macrophage
1
macrophage
1
megakaryocyte
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
plasma cell
1
plasmacytoid dendritic cell
1
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