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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
DNase-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
Assay category
12
DNA binding
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
2
February, 2021
2
July, 2019
2
November, 2020
1
May, 2021
Available data
36
bam
32
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
tsv
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
24
Homo sapiens
Biosample type
92
in vitro differentiated cells
90
tissue
24
primary cell
Organ
290
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
0
adipose tissue
Project
23
AMP
1
T1D
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
23
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
1
2
1
brain pericyte
1
1
adult endothelial progenitor cell
1
hepatic stellate cell
1
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