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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
2
ChIP-seq
1
RRBS
1
pCHi-C
Assay category
4
Transcription
2
DNA binding
1
DNA methylation
Target of assay
2
control
Date released
5
July, 2019
2
June, 2019
1
May, 2021
Available data
12
bam
10
bigWig
6
bed narrowPeak
bigBed narrowPeak
4
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
8
Homo sapiens
Biosample type
343
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
345
epithelium
324
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
7
AMP
1
T1D
Genome assembly (visualization)
5
hg19
4
GRCh38
Lab
7
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
8 results
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total RNA-seq
ChIP-seq
RRBS
pCHi-C
primary cell
cardiac fibroblast
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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