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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
9
DNase-seq
4
Hi-C
4
total RNA-seq
2
RRBS
1
FAIRE-seq
1
pCHi-C
Assay category
28
DNA binding
10
DNA accessibility
4
3D chromatin structure
4
Transcription
2
DNA methylation
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
21
October, 2019
12
June, 2019
8
July, 2019
6
November, 2017
1
March, 2020
1
May, 2021
Available data
42
bam
37
bigWig
27
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
6
fastq
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
49
Homo sapiens
Biosample type
560
tissue
66
cell line
49
primary cell
1
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
48
AMP
1
T1D
Genome assembly (visualization)
39
hg19
30
GRCh38
Lab
48
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
cardiac fibroblast
5
3
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
megakaryocyte
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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