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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
DNase-seq
1
FAIRE-seq
Assay category
14
DNA binding
7
DNA accessibility
Target of assay
12
histone
12
histone modification
7
narrow histone mark
5
broad histone mark
2
RNA binding protein
2
transcription factor
Date released
13
October, 2019
4
June, 2019
4
November, 2017
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
21
Homo sapiens
Biosample type
62
tissue
21
primary cell
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
0
bone element
Project
21
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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