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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
DNase-seq
3
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
5
DNA accessibility
3
3D chromatin structure
2
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
3
July, 2019
2
June, 2019
1
March, 2020
1
May, 2021
Available data
24
bam
20
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
bed bed3+
2
hic
2
tsv
1
bedpe bed3+
1
hdf5
1
tar
Organism
28
Homo sapiens
Biosample type
291
tissue
66
cell line
28
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
27
AMP
1
T1D
Genome assembly (visualization)
21
hg19
16
GRCh38
Lab
27
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
megakaryocyte
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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