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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
June, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
12
Homo sapiens
Biosample type
366
cell line
288
tissue
15
in vitro differentiated cells
12
primary cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
12
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
12 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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