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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
1
total RNA-seq
Assay category
9
DNA binding
5
DNA accessibility
4
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
8
July, 2019
5
June, 2019
Available data
21
bigWig
18
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
4
tsv
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
22
Homo sapiens
Biosample type
266
tissue
22
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
22
AMP
Genome assembly (visualization)
22
hg19
15
GRCh38
Lab
22
AMP-T2D consortium
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
total RNA-seq
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
pericardium fibroblast
1
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