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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
3
ChIP-seq
3
DNase-seq
1
RRBS
Assay category
4
Transcription
3
DNA accessibility
3
DNA binding
1
DNA methylation
Target of assay
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
6
June, 2019
5
July, 2019
Available data
10
bam
10
bigWig
6
bed narrowPeak
6
bigBed narrowPeak
4
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
11
Homo sapiens
Biosample type
257
tissue
64
cell line
11
primary cell
1
in vitro differentiated cells
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
11
AMP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
11
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
11 results
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total RNA-seq
ChIP-seq
DNase-seq
RRBS
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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