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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
Assay category
137
DNA binding
Target of assay
137
histone
137
histone modification
69
broad histone mark
68
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
84
May, 2021
24
August, 2017
17
June, 2019
11
September, 2018
1
November, 2017
Available data
167
bigWig
155
bed narrowPeak
137
bam
95
tagAlign
36
fastq
30
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
Organism
137
Homo sapiens
Biosample type
465
tissue
137
primary cell
64
in vitro differentiated cells
23
cell line
2
stem cell
Organ
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
84
T1D
53
AMP
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
84
Kyle Gaulton, UCSD
53
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
primary cell
monocyte
84
pancreatic endocrine cell
23
skeletal muscle myoblast
12
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
2
astrocyte of the cerebellum
1
cardiac muscle cell
1
skeletal muscle cell
1
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