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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 4pCHi-C
  • 3ChIP-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1GRO-seq
Assay category
  • 3DNA binding
  • 2Transcription
Target of assay
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1control
  • 1narrow histone mark
Date released
  • 4March, 2020
  • 3December, 2017
  • 2March, 2023
  • 1January, 2018
Available data
  • 4fastq
  • 4tsv
  • 3bam
  • 3bed bed3+
  • 3bigWig
  • 2bed narrowPeak
Organism
  • 8Homo sapiens
Biosample type
  • 2690tissue
  • 1084primary cell
  • 662cell line
  • 394in vitro differentiated cells
  • 10stem cell
Organ
  • 1connective tissue
Project
  • 8AMP
  • 2community
Genome assembly (visualization)
  • 3GRCh38
  • 3hg19
  • 1hg18
Lab
  • 8AMP-T2D consortium
  • 2Anna Gloyn, Oxford
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 2inconsistent control read length
BIOSAMPLE
ASSAY

10 results

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pCHi-C
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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