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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
78
ChIP-seq
42
ATAC-seq
8
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
125
Transcription
78
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
132
May, 2021
42
August, 2021
26
February, 2021
16
February, 2023
14
August, 2017
12
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
2
March, 2023
Available data
294
bam
262
bigWig
fastq
135
tsv
134
bed narrowPeak
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
257
Homo sapiens
Biosample type
2360
tissue
679
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
43
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
257
AMP
2
community
Genome assembly (visualization)
179
hg19
147
GRCh38
Lab
203
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
112
inconsistent ontology term
2
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
259 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
1
neural progenitor cell
7
21
10
adipocyte
5
14
8
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 21 more…
stem cell
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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