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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
Assay category
74
DNA binding
26
DNA accessibility
13
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
68
control
5
transcription factor
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
47
November, 2017
10
October, 2019
4
August, 2021
4
November, 2018
3
February, 2021
3
January, 2019
2
November, 2019
1
December, 2017
Available data
468
bam
423
fastq
bigWig
394
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
Organism
74
Homo sapiens
Biosample type
292
tissue
83
in vitro differentiated cells
73
cell line
32
primary cell
1
stem cell
Organ
52
liver
9
pancreas
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
Project
74
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
70
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
cell line
HepG2
52
Panc1
7
GM12878
6
EndoC_BH1
2
smooth muscle cell of the coronary artery
2
+ See 4 more…
stem cell
hESC
1
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