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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
127
total RNA-seq
29
ATAC-seq
5
GRO-seq
1
DNase-seq
Assay category
149
DNA binding
127
Transcription
30
DNA accessibility
Target of assay
81
histone
81
histone modification
42
narrow histone mark
38
broad histone mark
37
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
90
May, 2021
54
August, 2017
46
December, 2017
39
August, 2021
39
February, 2018
22
February, 2021
6
October, 2019
5
January, 2018
5
November, 2019
3
February, 2023
2
March, 2020
Available data
294
bam
262
bigWig
145
fastq
135
tsv
134
bed narrowPeak
40
tagAlign
28
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
311
Homo sapiens
Biosample type
1995
tissue
658
primary cell
600
cell line
307
in vitro differentiated cells
4
stem cell
Organ
63
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
311
AMP
Genome assembly (visualization)
279
hg19
268
GRCh38
5
hg18
Lab
301
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
BIOSAMPLE
ASSAY
311 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
3
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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stem cell
hESC
3
1
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