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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
Assay category
20
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
84
control
65
RNA binding protein
40
histone
40
histone modification
30
chromatin remodeller
20
broad histone mark
20
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
8
November, 2017
6
November, 2019
4
October, 2019
1
August, 2021
1
December, 2017
Available data
19
bam
19
bigWig
18
bed narrowPeak
10
bigBed narrowPeak
9
fastq
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bed bed3+
Organism
20
Homo sapiens
Biosample type
283
tissue
122
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
10
pancreas
9
liver
6
epithelium
Project
20
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
19
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
7
inconsistent control read length
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
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