Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1023total RNA-seq
  • 867ChIP-seq
  • 178DNase-seq
  • 170ATAC-seq
  • 123single cell RNA-seq
  • 87RNA microarray
  • 27WGBS
  • 26snATAC-seq
  • 25pCHi-C
  • 16Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
Assay category
  • 1162Transcription
  • 867DNA binding
  • 378DNA accessibility
  • 38DNA methylation
  • 163D chromatin structure
Target of assay
  • 593histone modification
  • 592histone
  • 309narrow histone mark
  • 283broad histone mark
  • 187control
  • 89transcription factor
  • 23RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 545February, 2021
  • 284August, 2017
  • 242October, 2019
  • 229August, 2021
  • 193May, 2020
  • 163June, 2019
  • 120July, 2018
  • 115May, 2019
  • 82November, 2017
  • 80April, 2019
  • 77July, 2019
  • 74October, 2018
  • 66May, 2022
  • 48December, 2017
  • 40March, 2020
  • 40May, 2021
  • 40November, 2019
  • 26November, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1907bam
  • 1732bigWig
  • 1072tsv
  • 881bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 153txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2571Homo sapiens
Biosample type
  • 2580tissue
  • 999primary cell
  • 654cell line
  • 378in vitro differentiated cells
  • 8stem cell
Organ
  • 545connective tissue
  • 487pancreas
  • 486adipose tissue
  • 361liver
  • 264brain
  • 238kidney
  • 237heart
  • 150bone element
  • 122limb
  • 98blood vessel
  • 98vasculature
  • 82musculature of body
  • 43nerve
  • 38artery
  • 25eye
  • 25spleen
  • 20lung
  • 18ureter
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1epithelium
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2548AMP
  • 19LungMap
  • 13T1D
Genome assembly (visualization)
  • 1772GRCh38
  • 1721hg19
Lab
  • 2347AMP-T2D consortium
  • 128Katalin Susztak, Upenn
  • 40Karen Mohlke, UNC
  • 34Kyle Gaulton, UCSD
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 91inconsistent ontology term
  • 27inconsistent control
  • 9audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2580 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans29371157543114
adipose tissue3812231
liver167145220131111
kidney49271364146111
bone element84
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego