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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1351
ChIP-seq
Assay category
1351
DNA binding
1342
Transcription
501
DNA accessibility
39
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Target of assay
631
histone modification
630
histone
450
transcription factor
328
narrow histone mark
302
broad histone mark
265
control
89
recombinant protein
88
RNA binding protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
397
November, 2017
218
October, 2019
176
August, 2017
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
48
December, 2017
34
December, 2018
25
January, 2019
18
August, 2021
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
1
May, 2021
Available data
1187
bam
986
bigWig
947
bed narrowPeak
730
bigBed narrowPeak
640
fastq
258
tagAlign
93
bed broadPeak
58
bigBed broadPeak
28
bed bed3+
3
tar
1
tagAlign bed3+
Organism
1344
Homo sapiens
Biosample type
867
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
533
liver
209
brain
145
pancreas
89
heart
79
blood vessel
79
vasculature
74
connective tissue
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
kidney
35
nerve
34
artery
29
musculature of body
20
spleen
15
epithelium
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
1347
AMP
4
T1D
Genome assembly (visualization)
936
hg19
896
GRCh38
Lab
1333
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
28
inconsistent control
27
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
1351 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
+ See 102 more…
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
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