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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
178
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1227
Transcription
867
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
163
June, 2019
10
April, 2020
10
November, 2018
8
January, 2021
6
August, 2021
4
October, 2019
3
August, 2017
2
February, 2023
2
July, 2019
1
August, 2022
1
May, 2022
Available data
181
bam
181
bed narrowPeak
181
bigBed narrowPeak
181
bigWig
177
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
12
fastq
1
txt
Organism
209
Homo sapiens
Biosample type
210
tissue
88
primary cell
2
cell line
1
in vitro differentiated cells
Organ
75
kidney
36
limb
33
musculature of body
28
brain
27
heart
20
pancreas
18
ureter
10
lung
5
blood vessel
5
vasculature
4
artery
4
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
190
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
177
GRCh38
166
hg19
Lab
184
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
1
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
210 results
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DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
6
1
heart
18
muscle of arm
17
brain
14
muscle of leg
13
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