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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
312
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
312
DNA binding
38
DNA methylation
29
DNA accessibility
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
77
October, 2019
69
July, 2019
47
September, 2023
40
May, 2021
36
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
16
February, 2023
15
April, 2019
12
December, 2017
9
November, 2018
9
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2019
1
March, 2019
Available data
1843
bam
1689
bigWig
1075
tsv
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1738
Homo sapiens
Biosample type
1741
tissue
632
primary cell
241
in vitro differentiated cells
239
cell line
8
stem cell
Organ
532
connective tissue
473
adipose tissue
361
pancreas
248
liver
146
bone element
140
heart
135
kidney
69
brain
33
blood vessel
33
vasculature
30
limb
30
musculature of body
25
eye
20
lung
16
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1657
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
965
hg19
960
GRCh38
Lab
1558
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
1741 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
298
51
7
4
3
1
4
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
6
1
1
bone element
84
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