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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
865
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
865
DNA binding
210
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1834
bam
1680
bigWig
1048
tsv
734
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2430
Homo sapiens
Biosample type
2439
tissue
887
primary cell
624
cell line
344
in vitro differentiated cells
6
stem cell
Organ
540
connective tissue
481
adipose tissue
436
pancreas
337
liver
259
brain
227
heart
224
kidney
146
bone element
114
limb
92
blood vessel
92
vasculature
76
musculature of body
42
nerve
36
artery
28
eye
23
spleen
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
3
epithelium
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
1
thymus
Project
2357
AMP
47
KPMP
19
LungMap
16
T1D
Genome assembly (visualization)
1652
GRCh38
1617
hg19
Lab
2256
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
month_released!
March, 2020
BIOSAMPLE
ASSAY
2439 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
islet of Langerhans
296
69
1
7
1
3
4
1
4
liver
166
145
2
1
3
1
1
kidney
49
27
13
64
6
1
1
1
bone element
84
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