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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
801
ChIP-seq
ATAC-seq
174
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
801
DNA binding
174
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
544
histone modification
543
histone
294
narrow histone mark
249
broad histone mark
170
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
193
May, 2020
165
August, 2021
159
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
66
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
28
May, 2022
26
November, 2018
22
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1737
bam
1600
bigWig
1068
tsv
652
bed narrowPeak
474
bigBed narrowPeak
348
fastq
238
tagAlign
175
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2354
Homo sapiens
Biosample type
2363
tissue
888
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
443
pancreas
340
liver
261
brain
234
heart
224
kidney
146
bone element
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2277
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1573
GRCh38
1545
hg19
Lab
2180
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
organ_slims!
limb
BIOSAMPLE
ASSAY
2363 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
70
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
liver
167
145
1
2
3
1
1
1
1
kidney
49
27
64
13
6
1
1
1
bone element
84
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