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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
274
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
274
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
166
May, 2020
165
August, 2021
163
June, 2019
158
August, 2017
120
July, 2018
71
July, 2019
58
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
36
March, 2020
28
May, 2022
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
20
November, 2019
19
April, 2020
16
February, 2023
12
November, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
3
October, 2017
1
August, 2022
1
January, 2019
1
March, 2019
Available data
1377
bam
1202
bigWig
1075
tsv
274
fastq
251
bed narrowPeak
246
bigBed narrowPeak
193
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
157
txt
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1881
Homo sapiens
Biosample type
1884
tissue
651
primary cell
595
cell line
240
in vitro differentiated cells
8
stem cell
Organ
508
connective tissue
450
adipose tissue
370
pancreas
270
liver
204
kidney
174
heart
146
bone element
77
brain
65
limb
56
musculature of body
41
blood vessel
41
vasculature
26
eye
20
lung
18
nerve
18
spleen
18
ureter
16
artery
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1800
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
1202
GRCh38
1195
hg19
Lab
1701
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
assay_title!
ATAC-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1884 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
298
20
1
7
4
3
1
1
4
liver
167
80
2
1
3
1
1
1
1
kidney
49
7
13
64
6
1
1
1
bone element
84
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